Selecting the Model

Start querying for orthologs by selecting a model (if no models are present please train a model first)

Submitting Gene Sequence

The user can submit the protein sequence of the query gene (a sample protein sequence is provided as example)

Submitting the Query

After providing the gene, the user can start the execution of Ortholog query.

Viewing the Orthologs

After completing the computations, the orthologous genes of the query gene will be provided. Using the slider the user can navigate through the orthologs. Also the user can go to a specific page directly.

Searching from the Orthologs

The user can search from the list of orthologous genes a specific gene. The user can search using patterns of multiple filters namely, Gene Name, Protein Name, Organism and UniProt ID. The seach filters can be cleared, which will revert to the list of all the orthologs.

Navigating Through the App

The user can navigate through the app using the side navigation bar, and use the various features.

Viewing the Models

In the 'View Models' section, the user can view the trained models, read the model information, navigate to the model database or even train new models.

Viewing the Databases

The users can view the various clusters of the model databases. A similar search functionality is also present.

Training a New Model

The users can start training the model by selecting the folder containing the fasta files of the orthologous clusters (also the optional 'Outliers.fasta' file).

Providing an Invalid Folder

However, if the user selects an invalid folder, an error message will be shown.

Assigning Model Parameters and Information

After selecting an appropriate folder, the user should specify the model parameters and other informations.

Starting Training

Finally, the user can start training the model